The Ge Laboratory, IBCAS

2025

Wang X†, Li N†, Wang Q†, Lei T-Y, Zhou J. Zhang F-M, Liao X-Z, Qiang C-G, Yu W-H, Han J-D, Ye Y-R, Jing C-Y, Wang M-X, Gao Q. Chen J-F, Jiao Y-N, Wu Z-Q, Guo Y-L, Wing RA, Doyle JJ*, Ge S*, Zou X-H*. 2025. Diploidization in a wild rice allopolyploid is both episodic and gradual. Proceedings of National Academy of Sciences USA 122: e2424854122[PDF]

Liu P-L†, Jing Z-Y†, Zhang R-G†, Ye C†, Zhu Z, Zhang X, Jiang C-K, Li R, Xie J-B, Niu S, Zhang J, Kong L, Zhao J, Ma Y, Zeisler-Diehl VV, Schreiber L, Karahara I, Mao J-F, Jiao Y, Ge S, Lin J*. 2025. Genomic insights into the evolution of Chinese sweetgum and its autumn leaf coloration. Plant Physiology 198: kiaf218[PDF]

2024

Meng Q-L†, Qiang C-G†, Li J-L†, Geng M-F, Ren N-N, Cai Z, Wang M-X, Jiao Z-H, Zhang F-M, Song X-J, Ge S*. 2024. Genetic architecture of ecological divergence between Oryza rufipogon and O. nivara. Molecular Ecology 33: e17268 [PDF]

Sandamal S†, Tennakoon A†, Wijerathna P†, Zhang H-X, Yu W-H, Qiang C-G, Han J-D, Zhang F-M, Ratnasekera D*, Ge S* 2024. Phenological and morphological variations of Oryza rufipogon and O. nivara in Sri Lanka and their evolutionary implications. Scientific Reports 14:31126[PDF]

Luo W, Xu Y, Cao J, Guo X, Han J, Zhang Y, Niu Y, Zhang M, Wang Y, Ge S and Chong K.* 2024. COLD6-OSM1 module senses chilling for cold tolerance via 2′,3′-cAMP signaling in rice. Molecular Cell 84: 4224-4238.[PDF]

Yang F-S#, Liu M#, Guo X#, Xu C, Mu W, Fang D, Xu Y-C, Zhang F-M, Wang Y-H, Yang T, Chen H, Sahu SK, Li R, Wang G, Wang Q, Xu X, Ge S, Liu H*, Guo Y-L*. 2024.Signatures of Adaptation and Purifying Selection in Highland Populations of Dasiphora fruticosa. Molecular Biology and Evolution 41 (6): msae099[PDF]

Zheng XM*, Ratnasekera D, Fan JY, Henry RJ, Song BK, Olsen KM, Joshi BK, Banaticla-Hilario MCN, Pusadee T, Melaku AG, Loko YLE, Vilayheuang K, Oppong GK, Poku SA, Wambugu PW, Ge S, Merotto A, Aung OM, Venuprasad R, Kohli A, Zhou WB, Qian Q. 2024. Global wild rice germplasm resources conservation alliance: World Wild-Rice Wiring. Molecular Plant 17: 516-518[PDF]

Jiang J, Xu Y-C, Zhang Z-Q, Chen J-F, Niu X-M, Hou X-H, Li X-T, Wang L, Zhang YE, Ge S, Guo Y-L*. 2024. Forces driving transposable element load variation during Arabidopsis range expansion. Plant Cell 36: 840-862[PDF]

2023

Jing C-Y†, Zhang F-M†, Wang X-H†, Wang M-X†, Zhou L, Cai Z, J-D, Geng M-F, Yu W-H, Jiao Z-H, Huang L, Liu R, Zheng X-M, Meng Q-L, Ren N-N, Zhang H-X, Du Y-S, Wang X, Qiang C-G, Zou X-H, Gaut BS, Ge S*. 2023. Multiple domestications of Asian rice. Nature Plants 9: 1221-1335[PDF]

Li Z†, Wang B†, Luo W, Xu Y, Wang J, Xue Z, Niu Y, Cheng Z, Ge S, Zhang W, Zhang J*, Li Q*, Chong K*. 2023. Natural variation of codon repeats in COLD11 endows rice with chilling resilience. Science Advances 9: eabq5506[PDF]

Wang J, Fu G-F, Tembrock L, Liao X-Z, Ge S, Wu Z-Q*. 2023. Mutational meltdown or controlled chain reaction: the dynamics of rapid plastome evolution in the hyperdiversity of Poaceae. Journal of Systematics and Evolution 61(2): 328-344[PDF]

Tennakoon A, Sandamal S, Ge S, Marambe B, Ratnasekera D*. 2023. Weedy rice: An insight into genetic diversity and population structure for effective weed management. Tropical Agricultural Research and Extension 26(2): 135-150[PDF]

Guo XL†, Hu XD†, Li JW, Shao BY, Wang YJ, Wang L, Li K, Lin DL, Wang HC, Gao ZY, Jiao YN, Wen YY, Ji HY, Ma CB, Ge S, Jiang WK*, Jin XH*. 2023. The Sapria himalayana genome provides new insights into the lifestyle of endoparasitic plants. BMC Biology 21(1): 34[PDF]

李珊珊，陈美，陈文俐，葛颂*。2023. 芒属植物野生资源研究及其进展。 植物科学学报 41(6): 705-718

2022

Huang W, Zhang L, Columbus JT, Hu Y, Zhao Y, Tang L, Guo Z, Chen W, McKain M, Bartlett M, Huang C-H, Li D-Z, Ge S, Ma H*. 2022. A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis. Molecular Plants 15: 755-777[PDF]

Yang T†, Liu R†, Luo Y†, Hu S†, Wang D†, Wang C, Pandey MK, Ge S, Xu Q, Li N, Li G, Huang Y, Saxena RK, Ji Y, Li M, Yan X, He Y, Liu Y, Wang X, Xiang C, Varshney RK*, Ding H*, Gao S*, Zong X*. 2022. Improved pea reference genome and pan-genome reveal novel genomic features and evolutionary characteristics. Nature Genetics 54: 1553-1563[PDF]

Sandamal S, Tennakoon A, Wijerathna P, Ge S, Amarasekera D, Marambe B, Elwany SM, Sorour S, Sabagh AE, Hassan MM, Ratnasekera D*. 2022. Phenotypic characterization of Oryza nivara (Sharma et Shastry) collected from different ecological niches of Sri Lanka. Phyton 91: 1269-1287[PDF]

Liu Q, Liu L, Ge S, Fu L, Bai S, Lv X, Wang Q, Chen W, Wang F, Wang L, Yan X-B*, Lu B*. 2022. Endo-allopolyploidy of autopolyploids and recurrent hybridization -- a possible mechanism to explain the unresolved Y-genome donor in polyploid Elymus species (Triticeae: Poaceae). Journal of Systematics and Evolution 59(5): 60: 344-360[PDF]

Tang L, Liao XZ, Tembrock LR, Ge S, Wu Z-Q*. 2022. A chromosome-scale genome and transcriptomic analysis of the endangered tropical tree Vatica mangachapoi (Dipterocarpaceae). DNA Research 29 (2): 1-10[PDF]

Jiang Y, Hu XD, Yuan Y, Guo XL, Chase MW, Ge S, Li JW, Fu JL, Li K, Hao M, Wang YM, Jiao YN, Jiang WK, Jin XH*. 2022. The Gastrodia menghaiensis (Orchidaceae) genomes provides new insights of orchid mycorrhizal interactions. BMC Plant Biology 22(1): 179[PDF]

葛颂。2022. 中国植物系统和进化生物学研究进展。 生物多样性 30(7): 22385 [PDF]

2021

Li J†, Zeng Y†, Pan Y†, Zhou L†, Zhang Z, Guo H, Lou Q, Shui G, Huang H, Tian H, Guo Y, Yuan P, Yang H, Pan G, Wang R, Zhang H, Yang S, Guo Y, Ge S, Li J*, Li Z*. 2021. Stepwise selection of natural variations at CTB2 and CTB4a improves cold adaptation during domestication of japonica rice. New Phytologist 231:1056–1072[PDF]

Zou X-H, Du Y-S, Wang X, Wang Q, Zhang B, Chen J, Chen M, Doyle JJ, Ge S*. 2021. Genome evolution in Oryza allopolyploids of various ages: Insights into the process of diploidization. The Plant Journal 105(3): 721-735[PDF]

Wang M-X, Jing C-Y, Wang X-H, Cai Z, Zhou L, Geng M-F, Han J-D, Guo J, Zhang F-M, Ge S*. 2021. Genomic landscape of parallel domestication of upland rice and its implications. Journal of Systematics and Evolution 59(2): 229-239[PDF]

Xu X, Ge S, Zhang F-M*. 2021. Genetic and geographic patterns of duplicate DPL genes causing genetic incompatiblity within rice: implications for multiple domestication events in rice. Rice Science 28(1): 58-68[PDF]

Geng M-F, Wang X-H, Wang M-X, Cai Z, Meng Q-L, Wang X, Zhou L, Han J-D, Li J-L, Zhang F-M, Guo Y-L, Ge S*. 2021. Genome-wide investigation on transcriptional responses to drought stress in wild and cultivated rice. Environmental and Experimental Botany 189: 104555[PDF]

Xu Y-C, Zhang J, Zhang D-Y, Nan Y-H, Ge S, Guo Y-L*. 2021. Identification of long noncoding natural antisense transcripts (lncNATs) correlated with drought stress response in wild rice (Oryza nivara). BMC Genomics 22: 424[PDF]

2020

Xu X, Meng Q-L, Geng M-F, Ren N-N, Zhou L, Du Y-S, Cai Z, Wang M-X, Wang X, Wang X-H, Han J-D, Jiang S, Jing C-Y, Liu R, Zheng X-M, Yang Q-W, Zhang F-M, Ge S*. 2020. Adaptive divergence in flowering time contributes to nearly complete reproductive isolation between incipient wild rice species (Oryza rufipogon and O. nivara). Science China Life Sciences 63(11): 1714-1724[PDF]

Liu P-L; Zhang X; Mao J-F; Hong Y-M; Zhang R-G; Yilan E; Nie S; Jia K; Jiang C-K; He J; Shen W; He Q; Zheng W; Abbas S; Jewaria PK; Tian X; Liu C-J; Jiang X; Yin Y; Liu B; Wang L; Jin B; Ma Y; Qiu Z; Baluska F; Samaj J; He X; Niu S; Xie J; Xie L; Xu H; Kong H; Ge S; Dixon RA; Jiao Y*; Lin J*. 2020. The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements. Genome Biology 21: 291[PDF]

Ge S*, Guo Y-L. 2020. Evolution of genes and genomes in the genomics era. Science China Life Sciences 63(4): 602-605[PDF]

郑晓明, 周海飞，陈文利，周廉，任宁宁，刘荣，孟庆霖，耿牧帆，刘开强，李丹婷，吕荣华，马小定，乔卫华, 朱永清，卢宝荣，杨庆文*，葛颂* 2020. 东南亚和南亚野生稻种质资源收集与初步研究。植物遗传资源学报 21(6): 1503-1511[PDF]

2019

Cai Z†, Zhou L†, Ren N-N†, Xu X†, Liu R, Huang L, Zheng X-M, Meng Q-L, Du Y-S, Wang M-X, Geng M-F, Chen W-L, Jing C-Y, Zou X-H, Guo J, Chen W-B, Zeng H-Z, Liang Y-T, Wei X-H, Guo Y-L, Zhou H-F, Zhang F-M, Ge S*. 2019. Parallel speciation of wild rice associated with habitat shifts. Molecular Biology and Evolution 36: 875-889 [PDF]

Zhao Y-P†, Fan G†, Yin P-P†, Sun S†, Li N†, Hong X†, Zhang H, Hu G, Zhang F-M, Han J-D, Hao Y-J, Xu Q, Yang X, Xia W, Chen W, Lin H-Y, Zhang R, Chen J, Zheng X-M, Lee S. M-Y, Lee J, Uehara K, Wang J, Yang H, Fu C-X*, Liu X*, Xu X*, Ge S* 2019. Resequencing 545 ginkgo genomes across the world reveals evolutionary history of the living fossil. Nature Communications 10: 4201 [PDF]

Liu W†, Chen L†, Zhang S†, Hu F, Wang Z, Lyu J, Wang B, Xiang H, Zhao R, Tian Z*, Ge S*, Wang W*. 2019. Decrease of gene expression diversity during domestication of animals and plants. BMC Evolutionary Biology 19:19 [PDF]

Niu X-M†, Xu Y-C†, Li Z-W, Bian Y-T, Hou X-H, Chen J-F, Zou Y-P, Jiang J, Wu W, Ge S, Balasubramanian S, Guo Y-L*. 2019. Transposable elements drive rapid adaptation in Capsella rubella. Proceedings of National Academy of Sciences USA 116: 6908-6913 [PDF]

Li S-S, Zhou H-F, Chen W-L, Yan J, Cai Z, Wei R-X, Chen C-H, Han B, Li J-Q, Sang T, Ge S*. 2019. Population genetics and evolutionary history of Miscanthus species in China. Journal of Systematics and Evolution 57: 530-542 [PDF]

Chen J, Hao Z, Guang X, Zhao C, Wang P, Xue L, Zhu Q, Yang L, Sheng Y, Zhou Y, Xu H, Xie H, Long X, Zhang J, Wang Z, Shi M, Lu Y, Liu S, Guan L, Zhu Q, Yang L, Ge S, Cheng T, Laux T, Gao Q, Peng Y, Liu N*, Yang S*, Shi J*2019. De novo Liriodendron genome sheds lights on angiosperm phylogeny and genome differentiation between a vicariad species-pair of east Asia-east North America. Nature Plants 5: 18-25 [PDF]

Ge S. 2019. Introduction of barley to the Tibetan Plateau: an important step toward Tibetan civilization. National Science Review 6: 1014 (Commentaries) [PDF]

2018

Sandamal S, Tennakoon A, Meng Q-L, Marambe B, Melo A, Ratnasekera D, Ge S*. 2018. Population genetics and evolutionary history of Oryza rufipogon and O. nivara in Sri Lanka. Ecology and Evolution 8: 12056-12065 [PDF]

Yu X†, Zhao Z†, Zheng X, Zhou J, Kong W, Wang P, Bai W, Zheng H, Zhang H, Li J, Liu J, Wang Q, Zhang L, Liu K, Yu Y, Guo X, Wang J, Lin Q, Wu F, Ren Y, Zhu S, Zhang X, Cheng Z, Lei C, Liu S, Liu X, Tian Y, Jiang L, Ge S, Wu C,* Tao D,* Wang H,* Wan J* 2018. A selfish genetic element confers non-Mendelian inheritance in rice. Science 360: 1130-1132 [PDF]

葛颂*、黄宏文、朱伟华、焦根林、姜晔、金红、郭嘉。2018. 绿色创造未来---第19届国际植物学大会在深圳隆重超快。科技导报 38（增刊）：48-64

武维华*、文军、朱玉贤、黄宏文、种康、李德铢、安黎哲、赵世伟、葛颂。2018. 植物科学助力绿色发展---第19届国际植物学大会热点评述。科技导报 38（增刊）：9-16

黄宏文*、李德铢、安黎哲、葛颂。2018. 植物科学助力绿色发展---第19届国际植物学大会热点评述。科技导报 38（增刊）：17-25

葛颂*、李德铢。2018. 国际植物分类学恩格勒金奖及其首位亚洲获奖人---洪德元。科技导报 38（增刊）：90-94

2017

Cai Z, Ge S*. 2017. Machine learning algorithms improve the power of phytolith analysis: A case study of the tribe Oryzeae (Poaceae). Journal of Systematics and Evolution 55: 377-384 [PDF]

葛颂。2017. 什么决定了物种的多样性? 科学通报 62(19): 2033-2041 [PDF]

Shenzhen Declaration Drafting Committee (Crane PR, Ge S, Hong D-Y, Huang H-W, Jiao G-L, Knapp S, Kress WJ, Mooney H, Raven PH, Wen J, Wu W-H, Yang H-M, Zhu W-H, and Zhu Y-X). 2017. The Shenzhen Declaration on Plant Sciences -- Uniting plant sciences and society to build a green, sustainable Earth. Journal of Systematics and Evolution 55: 411-414 [PDF]; PhytoKeys 86: 1–2 [PDF]; Toxon 1261-1262 [PDF]

Ge S, Wen J. 2017. The XIX International Botanical Congress, the Shenzhen Declaration on Plant Sciences, and the Resolutions of IBC 2017. Journal of Systematics and Evolution 55: 411-414 [PDF]

Qiu J, Zhou Y, Mao L, Ye C, Wang W, Zhang J, Yu Y, Fu F, Wang Y, Qian F, Qi T, Wu S, Sultana M H, Cao Y-N, Wang Y, Timko M P, Ge S, Fan L*, Lu Y*. 2017. Genomic variation associated with local adaptation of weedy rice during de-domestication. Nature Communications 8: 15323 [PDF]

Duan P, Xu J, Zeng D, Zhang B, Geng M, Zhang G, Huang K, Huang L, Xu R, Ge S, Qian Q, Li Y* 2017. Natural variation in the promoter of GSE5 contributes to grain size diversity in rice.Molecular Plants 10: 685-694 [PDF]

Wu Z-Q*, Gu C-H, Liu F-Q, Tembrock L R, Zhang D, Ge S. 2017. Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species. PLoS One. 12(5): e0177553 [PDF]

Ma X, Cai Z, Liu W, Ge S, Tang L*. 2017. Identification, genealogical structure and population genetics of S-alleles in Malus sieversii, the wild ancestor of domesticated apple. Heredity [PDF]

2016

Guo J, Huang L, Liu R, Zheng X-M, Liu P-L, Du Y-S, Cai Z, Zhou L, Wei X-H, Zhang F-M, Ge S*. 2016. Widespread and adaptive alterations in genome-wide gene expression associated with ecological divergence of two Oryza species. Molecular Biology and Evolution 33: 62-78 [PDF]

Wu Z-Q*, Ge S. 2016. The whole chloroplast genome of wild rice (Oryza australiensis). Mitochondrial DNA 27:1062-1063 [PDF]

Bai Z, Chen J, Liao Y, Wang M, Liu R, Ge S, Wing R, Chen M*. 2016. Sequence-based analysis of the origin and impact of copy number variation in the rice genome. BMC Genomics 17:261 [PDF]

Li Z-W, Chen X, Wu Q, Hagmann J, Han T-S, Zou Y-P, Ge S, Guo Y-L. 2016. On the origin of de novo genes in Arabidopsis thaliana populations. Genome Biology and Evolution 8: 2190-2202 [PDF]

Guan R†, Zhao Y†, Zhang H†, Fan G†, Liu X, Zhou W, Shi C, Wang J, Liu W, Liang X, Fu Y, Ma K, Zhao L, Zhang F, Lu Z, Lee S M-Y, Xu X, Wang J, Yang H, Fu C*, Ge S*, Chen W*. 2016. Draft genome of the living fossil Ginkgo biloba. GigaSciencec 5: 49 [PDF]

2015

Liu R, Zheng X-M, Zhou L, Zhou H-F; Ge S*. 2015. Population genetic structure of Oryza rufipogon and Oryza nivara: implications for the origin of O. nivara. Molecular Ecology 24: 5211-5228 [PDF]

Ma Y, Dai X, Xu Y, Luo W, Zheng X, Zeng D, Pan Y, Lin X, Liu H, Zhang D, Xiao J, ??Guo X, Xu S, Niu Y, Jin J, Zhang H, Xu X, Li L, Wang W, Qian Q, Ge S, Chong K*. 2015. COLD1 confers chilling tolerance in rice. Cell 160: 1209-1221 [PDF]

Zou X-H, Du Y-S, Tang L, Xu X-W, Doyle JJ, Sang T, Ge S*. 2015. Multiple origins of BBCC allopolyploid species in the rice genus (Oryza). Scientific Reports 5: 14876. DOI: 10.1038/srep14876 [PDF]

Tang L, Zou X-H, Zhang L-B, Ge S*. 2015. Multilocus species tree analyses resolve the ancient radiation of the subtribe Zizaniinae (Poaceae). Molecular Phylogenetics and Evolution 84: 232-239 [PDF]

Wu Z*, Tembrock L, Ge S. 2015. Are differences in genomic datasets due to true biological variants or errors in genome assembly: an example from two chloroplast genomes? PLoS One 10(2): e0118019 [PDF]

Xu X-W*, Wu J-W, Qi M-X, Lu Q-X, Lee P F, Lutz S, Ge S, Wen J*. 2015. Comparative phylogeography of the wild-rice genus Zizania (Poaceae) in eastern Asia and North America. American Journal of Botany 102:239-247 [PDF]

Han T-S, Wu Q, Hou X-H, Li Z-W, Zou Y-P, Ge S, Guo Y-L*. 2015. Frequent introgressions from multiple diploid species contributed to the success of tetraploid Shepherd’s purse (Capsella bursa-pastoris). Molecular Plant 8: 427-438 [PDF]

Guo L-B, Qiu J, Han Z, Ye Z, Chen C, Liu C, Xin X, Ye C, Wang Y-Y, Xie H, Wang Y, Bao J, Tang S, Xu J, Gui Y, Fu F, Wang W, Zhang X, Zhu Q, Guang X, Wang C, Cui H, Cai D, Ge S, Tuskan G, Yang X, Qian Q, He S-Y, Wang J, Zhou X, Fan L*. 2015. A host plant genome (Zizania latifolia) after a century-long endophyte infection. Plant Journal 83: 600-609 [PDF]

Huang Y, Wang X, Ge S, Rao G-Y*. 2015. Divergence and adaptive evolution of the gibberellin oxidase genes in plants. BMC Evolutionary Biology 15: 207 [PDF]

Ma H-Z, Cai Z, Zhang F-M, Zhang H, Ge S, Dai S-L*, Chen W-L*. 2015. Taxonomic evaluation of Miscanthus nudipes (Poaceae) based on morphological and molecular evidence. Phytotaxa 205: 1-020 [PDF]

Wen J, Liu JQ, Ge S, Xiang, Q-Y, Zimmer EA. 2015. Phylogenomic approaches to deciphering the tree of life. Journal of Systematics and Evolution 53: 369-370 [PDF]

景春艳，张富民*，葛颂。2015. 水稻起源与驯化——来自基因组学的证据。 科技导报 33: 27-32 [PDF]

2014

Wang C-H, Zheng X-M, Xu Q, Yuan X-P, Huang L, Zhou H-F, Wei X-H*, Ge S*. 2014. Genetic diversity and classification of Oryza sativa with emphasis on Chinese rice germplasm. Heredity 112: 489-496 [PDF]

Zhou S-L, Zou X-H, Zhou Z-Q, Liu J, Xu C, Yu J, Wang Q, Zhang D-M, Wang X-Q, Ge S, Sang T, Pan K-Y, Hong D-Y. 2014. Multiple species of wild tree peonies gave rise to the ‘King of Flowers’, Paeonia suffruticosa Andrews.Proceedings of the Royal Society B: Biological Sciences 281: 41687-973-986[PDF]

2013

Zou X-H, Yang Z, Doyle JA, Ge S*. 2013. Multilocus estimation of divergence times and ancestral population sizes of Oryza species and implications for the diversification of the genus. New Phytologist 198: 1155-1164 [PDF]

Wu W, Zheng X-M, Lu G, Zhong Z, Gao H, Chen L, Wu C, Wang H-J, Wang Q, Zhou K, Wang J-L, Wu F, Zhang X, Guo X, Cheng Z, Lei C, Lin Q, Jiang L, Wang H, Ge S*, Wan J*.. 2013. The association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia. Proceedings of National Academy of Sciences USA 110: 2775-2780 [PDF]

Sang T*, Ge S. 2013. Understanding rice domestication and implications for cultivar improvement. Current Opinion in Plant Biology 16: 139-146 [PDF]

Huang L, Du Y-S, Zheng X-M, Liu R, Zhou H-F, Ge S*. 2013. Nucleotide diversity of 11 S seed storage protein gene and its implications for ecological adaptation of Oryza nivara. Journal of Systematics and Evolution 51: 641-651 [PDF]

Zhou H-F*, Li S-S, Ge S. 2013. Isolation and characterization of microsatellite loci for a bioenergy grass Miscanthus sacchariflorus (Poaceae). Applications in Plant Sciences 1: 1200210 [PDF]

2012

Ai B, Wang Z-S, Ge S*. 2012. Genome size is not correlated with effective population size in the Oryza species. Evolution 66: 3302-3310 [PDF]

Wu Z-Q, Ge S*. 2012. Phylogeny of the BEP clade in grasses revisited: evidence from whole genome sequences of chloroplast. Molecular Phylogenetics and Evolution 62: 573-578 [PDF]

Xu X†, Liu X†, Ge S†, Jensen JD†, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, Li Y, Yu C, Kristiansen K, Zhang X, Wang J, Wright M, McCouch S, Nielsen R*, Wang J*, Wen W*. 2012. Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nature Biotechnology 30: 105-111(* co-first authors) [PDF]

Yan J†, Chen W-L†, Luo F, Ma H-Z, Meng A-P, Li X-W, Zhu M, Li S-S, Zhou H-F, Zhu W-X, Han B, Ge S, Li J-Q, Sang T*. 2012. Variability and adaptability of Miscanthus species evaluated for energy crop domestication. Global Change Biology Bioenergy 4: 49-60 (*co-first authors) [PDF]

Xue Z, Duan L, Li M, Guo J, Ge S, Dicks J, óMáille P, Osbourn A, Qi X*. 2012. Divergent evolution of oxidosqualene cyclases in plants. New Phytologist 193: 1022-1038 [PDF]

Li X†, Zhu J†, Hu F†, Ge S, Ye M, Xiang H, Zhang G, Zheng X-M, Zhang H, Zhang S, Li Q, Luo R, Yu C, Yu J, Sun J, Zou X, Cao X, Xie X*, Wang J*, Wang W*. 2012. Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression. BMC Genomics 13: 300 [PDF]

Liu P-L, Wan J-N, Guo Y-P, Ge S, Rao G-Y*. 2012. Adaptive evolution of the chrysanthemyl diphospha1 synthase gene involved in irregular monoterpene metabolism. BMC Evol Biol 12: 214 [PDF]

2011

López-Pujol J*, Zhang F-M, Sun H-Q, Ying T-S, Ge S*. 2011. Centres of plant endemism in China: places for survival or for speciation? Journal of Biogeography 38: 1267-1280 [PDF]

Ge S*, Sang T. 2011. Inappropriate model rejects independent domestications of indica and japonica rice. Proceedings of National Academy of Sciences USA 108(39): E755 (Letter) [PDF]

Sun H-Q*, Huang B-Q, Yu X-H, Kou Y, An D-J, Luo Y-B, Ge S. 2011. Reproductive isolation and pollination success of rewarding Galearis diantha and non-rewarding Ponerorchis chusua (Orchidaceae). Annals of Botany 107: 39–47 [PDF]

Li Z-M, Zheng X-M, Ge S*. 2011. Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences. Theoretical and Applied Genetics 123: 21-23 [PDF]

Zhou H-F, Li S-S, Ge S*. 2011. Development of microsatellite markers for Miscanthus sinensis (Poaceae) and cross-amplification in other related species. American Journal of Botany 98: e195-e197 [PDF]

Wei R-X, Ge S*. 2011. Evolutionary history and complementary selective relaxation of the duplicated PI genes in grasses. Journal of Integrative Plant Biology 53 (8): 682-693 [PDF]

Zang L-L, Zou X-H, Zhang F-M, Yang Z, Ge S*. 2011. Phylogeny and species delimitation of the C-genome diploid species in Oryza. Journal of Systematics and Evolution 49 (5): 386-395 [PDF]

López-Pujol J*, Zhang F-M, Sun H-Q, Ying T-S, Ge S*. 2011. Mountains of southern China as ‘plant museums’ and ‘plant cradles’: evolutionary and conservation insights. Mountain Research and Development 31: 261-269 [PDF]

Prasad V, Str?mberg CAE*, Leaché AD, Samant B, Patnaik R, Tang L, Mohabey D M, Ge S, Sahni A. 2011. Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae.. Nature Communications 2: 480 (DOI: 10.1038/ncomms1482) [PDF]

Ford-Lloyd B, Schmidt M, Armstrong S, Barazani O, Engels J, Hadas R, Hammer K, Kell SP, Kang D, Khoshbakht K, Li Y, Long C, Lu B, Ma K, Nguyen VT, Qiu L, Ge S, Wei W, Zhang Z, Maxted N. 2011. Crop wild relatives - Undervalued, underutilized and under threat? BioScience 61:559-565 [PDF]

马洪峥，李珊珊，葛颂，戴思兰，陈文俐. 2011. 能源作物芒属双药芒组SSR引物的筛选及其评价。生物多样性 19: 535-542 [PDF]

2010

Zheng X-M, Ge S*. 2010. Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara). Molecular Ecology 19: 2439-2454 [PDF]

Sun H-Z, Ge S*. 2010. Molecular evolution of the duplicated TFIIAγ genes in Oryzeae and its relatives. BMC Evolutionary Biology 10: 128 [PDF]

Tang L, Zou X-H, Achoundong G, Potgieter C, Second G, Zhang D-Y, Ge S*. 2010. Phylogeny and biogeography of the rice tribe (Oryzeae): Evidence from combined analysis of 20 chloroplast fragments. Molecular Phylogenetics and Evolution 54: 266-277 [PDF]

Bao Y*, Wendel J F, Ge S. 2010. Multiple patterns of rDNA evolution following polyploidy in Oryza. Molecular Phylogenetics and Evolution 55: 136-142 [PDF]

Wang E, Xun X, Zhang L, Zhang H, Lin L, Wang Q, Li Q, Ge S, Lu B-R, Wang, W, He, Z. 2010. Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication. BMC Evolutionary Biology 10:108 [PDF]

Xu X, Walters C, Antolin M F, Alexander M L, Lutz S, Ge S, Wen J. 2010. Phylogeny and biogeography of the eastern Asian–North American disjunct wild-rice genus (Zizania L., Poaceae). Molecular Phylogenetics and Evolution 55: 1008-1017 [PDF]

Tian S, Lopez-Pujol J, Wang H-W, Ge S, Zhang Z-Y*. 2010. Molecular evidence for glacial expansion and interglacial retreat during Quaternary climatic changes in a montane temperate pine (Pinus kwangtungensis Chun ex Tsiang) in southern China. Plant Systematics and Evolution 284: 219-229 [PDF] 　

Sun H-Q*, Alexandersson R, Ge S. 2010. Positive effects of flower abundance and synchronous flowering on pollination success, and pollinia dispersal in rewardless Changnienia amoena (Orchidaceae). Biological Journal of the Linnean Society 99: 477-488 [PDF]

Wang Z-S, Sun H-Q, Wang H-W, Ge S*. 2010. Isolation and characterization of 50 nuclear microsatellite markers for Cathaya argyrophylla, a Chinese endemic conifer. American Journal of Botany 97: e117-e120 [PDF]

Ge S*, Hong D-Y. 2010. Biosystematic studies on Adenophora potaninii Korsh. complex (Campanulaceae). V. A taxonomic treatment. Journal of Systematics and Evolution 48 (6): 445–454 [PDF]

Hong D-Y*, Ge S. 2010. Taxonomic notes on the genus Adenophora (Campanulaceae) in China. Novon 20: 426–428 [PDF]

Tang M*, Yu FH, Jin XB, Ge S. 2010. High genetic diversity in the naturally rare plant Taihangia rupestris Yu et Li (Rosaceae) dwelling only cliff faces. Polish Journal of Ecology 58(2): 241-248

孙红正，葛颂*. 2010. 重复基因的进化－回顾与进展。植物学报 45:13-22 [PDF]

2009

Yang Y-H, Zhang F-M, Ge S*. 2009. Evolutionary rate patterns of the gibberellin pathway genes. BMC Evolutionary Biology 9: 206 [PDF]

Zhang L-B, Zhu Q, Wu Z-Q, Ross-Ibarra J, Gaut B S, Ge S*, Sang T. 2009. Fast fixation of non-shattering allele but slow domestication of rice. New Phytologist : 184(3): 708-720 [PDF]

Wang B, Ding Z, Liu W, Pan J, Li C, Ge S, Zhang D*. 2009. Polyploid evolution in Oryza officinalis complex of the genus Oryza. BMC Evolutionary Biology 9: 250 [PDF]

Peng ZY, HY Zhang, TT Liu, KM Dzikiewicz, SG Li, XF Wang, GC Hu, ZG Zhu, XH Wei, QH Zhu, ZX Sun, S Ge, LG Ma, L Li, XW Deng*. 2009. Characterization of the genome expression trends in the heading-stage panicle of six rice lineages. Genomics 93: 169-178 [PDF]

Sun H-Q*, Cheng J, Zhang F-M, Luo Y-B, Ge S. 2009. Reproductive success of non-rewarding Cypripedium japonicum benefits from low spatial dispersion pattern and asynchronous flowering. Annals of Botany 103: 1227-1237 [PDF]

Wang L, Hao L, Li X, Hu S, Ge S, Yu J*. 2009. SNP deserts of Asian cultivated rice: genomic regions under domestication. Journal of Evolutionary Biology 22: 751-761 [PDF]

Li Z, Zhang H, Wang X, Ge S, Gu X, Gao G, Luo J*. 2009. Expression pattern divergence of duplicated genes in rice. BMC Bioinformatics 10: S8 [PDF]

2008

Zou X-H, Zhang F-M, Zhang J-G, Zang L-L, Tang L, Wang J, Sang T, Ge S*. 2008. Analysis of 142 genes resolves the rapid diversification of the rice genus. Genome Biology 9:R49 [PDF]

Xu X-W, Ke W-D, Yu X-P, Wen J, Ge S*. 2008. A preliminary study on population genetic structure and phylogeography of the wild and cultivated Zizania latifolia (Poaceae) based on Adh1a sequences. Theoretical and Applied Genetics 116: 835–843 [PDF]

Tian S, Li D-R, Wang H-W, Ge S, Zhang Z-Y.* 2008. Tian S, Luo L-C, Ge S, Zhang Z-Y*. 2008. Clear genetic structure of Pinus kwangtungensis (Pinaceae) revealed by a plastid DNA fragment with a novel minisatellite. Annals of Botany 102: 69-78　 [PDF]

López-Pujol1 J, Zhang F-M, Ge S. 2008. No correlation between heterozygosity and fitness in the narrow endemic and critically endangered Clematis acerifolia (Ranunculaceae). Biochemical Genetics 46: 433-445 [PDF]

Guo A-Y, Zhu Q-H, Gu X, Ge S, Yang J, Luo J. 2008. Genome-wide identification and evolutionary analysis of the plant specific SBP transcription factor family. Gene 418: 1-8. [PDF]

Vaughan D A, Ge S, Kaga A, Tomooka N. 2008. Phylogeny and biogeography of the genus Oryza. In: Hirano H-Y; Hirai A; Sano Y; Sasaki T (eds.) Rice Biology in the Genomics Era, Biotechnology in Agriculture and Forestry. Vol. 62. Springer, pp. 219-234. [PDF]

Yuan Q-J, Zhang Z-Y, Peng H, Ge S. 2008. Chloroplast phylogeography of Dipentodon (Dipentodontaceae) in southwest China and northern Vietnam. Molecular Ecology17: 1054-1065 [PDF]

Zhou H-F, Zheng X-M, Wei R-X, Second G, Vaughan D A, Ge S*. 2008. Contrasting population genetic structure and gene flow between Oryza rufipogon and Oryza nivara. Theoretical and Applied Genetics 117: 1181-1189 [PDF]

包颖，葛颂. 2008. 稻属Oryza多倍体的研究历史及存在问题. 植物分类学报 46: 3-12 [PDF]

邹新慧，葛颂*. 2008. 基因树冲突与系统发育基因组学研究. 植物分类学报 46: 795-807 [PDF]

2007

Zhang L-B, Ge S*. 2007. Multilocus analysis of nucleotide variation and speciation in Oryza officinalis and its close relatives. Molecular Biology and Evolution 24: 769-783 [PDF]

Zhu Q, Zheng X, Luo J, Gaut B S, Ge S*. 2007. Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice. Molecular Biology and Evolution 24: 875-888 [PDF]

Zhang Y-P, Ge S. 2007. Molecular evolution study in China: progress and future promise. Philosophical Transactions of the Royal Society B: Biological Sciences 362: 973-986 [PDF]

Sang T, Ge S. 2007. Genetics and phylogenetics of rice domestication. Current Opinion in Genetics and Developments 17: 533-538 [PDF]

Zhang Z-Y, Zheng X-M, Ge S*. 2007. Population genetic structure of Vitex negundo (Verbenaceae) in Three-Gorge Area of the Yangtze River: the impact of rivers on gene flow in plants. Biochemical Systematics and Ecology 35:506-516 [PDF]

Shi X, Wang X, Li Z, Zhu Q, Yang J, Ge S*, Luo J*. 2007. Evidence that natural selection is the primary cause of the GC content variation in rice genes. Journal of Integrative Plant Biology 49: 1393-1399 [PDF]

Sang T, Ge S. 2007. The puzzle of rice domestication. Journal of Integrative Plant Biology 49: 760-768 [PDF]

王红卫，邓辉胜，谭海明，覃琨，张定亨，葛颂*. 2007. 银杉花粉生命力及其变异.植物生态学报 31: 1199-1204 [PDF]

2006

Wang H-W, Ge S*. 2006. Phylogeography of the endangered Cathaya argyrophylla (Pinaceae) inferred from sequence variation of mitochondrial and nuclear DNA. Molecular Ecology 15: 4109-4123 [PDF]

Lopez-Pujol J*, Zhang F-M, Ge S. 2006. Plant biodiversity of China: richness, threatens and conservation. Biodiversity and Conservation 15: 3983-4026 [PDF]

Bao Y, Zhou H-F, Hong D-Y, Ge S*. 2006. Genetic diversity and evolutionary relationships of Oryza species with the B- and C-genomes as revealed by SSR markers.Journal of Plant Biology 49: 339-347 [PDF]

Sun K, Chen W, Ma R-J, Chen X, Li A, Ge S*. 2006. Genetic variation in Hippophae rhamnoides subsp. sinensis (Elaeagnaceae) revealed by RAPD markers. Biochemical Genetics 44: 186-197 [PDF]

Wang X-Y, Shi X-L, Li Z, Zhu Q-H, Kong L, Tang W, Ge S, Luo J-C. 2006. Statistical inference of chromosomal homology based on gene colinearity and applications to arabidopsis and rice. BMC Bioinformatics 7: 447 [PDF]

Shi X-L, Wang X-Y, Li Z, Zhu Q-H, Tang W, Ge S*, Luo J-C*. 2006. Nucleotide substitution pattern in rice paralogues: implication for negative correlation between the synonymous substitution rate and codon usage bias. Gene 376: 199-206 [PDF]

Li A, Ge S*. 2006. Genetic variation in Changnienia amoena, an endangered orchid endemic to China. Plant Systematics and Evolution 258: 251-260 [PDF]

Sun H-Q, Luo Y-B, Alexandersson R, Ge S*. 2006. Pollination and pollen flow of the endanged orchid, Changnienia amoena (Orchidaceae). Botanical Journal of Linnean Society 150, 165-175 [PDF]

Qian W*, Ge S, Hong D-Y, 2006. Genetic diversity in accessions of wild rice Oryza granulata from South and Southeast Asia, Genetic Resources and Crop Evolution 53: 197-204 [PDF]

Liu Q, Ge S, Tang H, Zhang X, Zhu G, Lu B-R*. 2006. Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal ITS and chloroplast trnL-F sequences. New Phytologist 170: 411-420 [PDF]

郭亚龙，葛颂*. 2006. 稻族的系统发育及其研究进展. 植物分类学报 44(2): 211-230 [PDF]

2005

Zhu Q-H, Ge S*. 2005. Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes. New Phytologist 167: 249-265 [PDF]

Guo Y-L, Ge S* 2005. Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochrondrial and nuclear genomes. American Journal of Botany 92:1548-1558. [PDF]

Lopez-Pujol J, Zhang F-M, Ge S, 2005. Population Genetics conservation of the critically endangered Clematis acerifolia (Ranunculaceae). Canadian Journal of Botany 83: 1248-1256 [PDF]

Gao L-Z, Hong D-Y, Ge S. 2005. Patterns of allozyme variation at two stages of the life history in wild rice Oryza rufipogon and conservation genetic implications. Biodiversity and Conservation. 14: 2821-2834 [PDF]

Ge S, Guo Y-L, Zhu Q-H. 2005. Molecular phylogeny and divergence of the rice tribe (Oryzeae), with special reference to the origin of the genus Oryza. In Toriyama K, Heong K L, Hardy B (eds), Rice is life: scientific perspectives for the 21st century. Philippines: IRRI. Pp. 40-44. [PDF]

Lu B-R*, Ge S. 2005. Taxonomic treatment of Porteresia coarctata (Poaceae: Oryzeae). Nordical Journal of Botany 23: 555-558 [PDF]

Zhang F-M, Chen W-L, Yang Q-E, Ge S*. 2005. RAPD variation and population genetic structure in the Acomitum delavayi complex (Ranunculaceae), a diploid species group distributed mainly in the Hengduan Mountains of China. Plant Systematics and Evolution 254: 39-48 [PDF]

Ren Y*, Liu X, Ge S. 2005. Low genetic diversity among populations of the rare Chinese endemic Kingdonia uniflora revealed by RAPD-analysis. Israel Journal of Plant Science. 53: 65-73

俞国琴，郑云飞，石春海，葛颂*. 2005. 古DNA及其在生物系统与进化研究中的应用。植物学通报 22: 267-275 [PDF]

Wang X, Shi X, Hao B, Ge S*, Luo J*. 2005. Evidence that rice and other cereals have a common ancient tetraploid progenitor. New Phytologist 165: 937-946 [PDF]

Bao Y, Lu B R, Ge S*. 2005. Identification of genomic constitutions of Oryza species with the B and C genomes species by the PCR-RFLP method. Genetic Resources and Crop Evolution 52: 69-76 [PDF]

Yu G-Q, Bao Y, Shi C-H, Dong C-Q, Ge S*. 2005. Genetic diversity and population differentiation of Liaoning weedy rice detected by RAPD and SSR markers. Biochemical Genetics 43: 261-270 [PDF]

孙海芹，李昂，班玮，郑晓明，葛颂*. 2005. 独花兰的形态变异及其适应意义。生物多样性 13: 376-386 [PDF]

蒋志刚，葛颂. 2005. 探索长江流域物种濒危机制与保护对策。生物多样性 13: 367-375[PDF]

2004

Bao Y, Ge S*. 2004. Origin and Phylogeny of Oryza species with the CD genome based on multiple-gene sequence data. Plant Systematics and Evolution 249: 55-66 [PDF]

郭亚龙，葛颂*. 2004. 线粒体nad1基因内含子在稻族系统学研究中的价值--- 兼论Porteresia的系统位置。植物分类学报 42(4): 333-344 [PDF]

2003

Zhang F-M, Kong H-Z, Ge S*. 2003. Allozyme variation and population differentiation of Aconitum delavayi complex (Ranunculaceae) in Hengduan Mountains of China. Biochemical Genetics 41(1/2): 47-55 [PDF]

Sun K, Ma R-J, Chen X-L, Li C-B, Ge S*. 2003. Hybrid origin of the diploid species Hippophae goniocarpa Lian, Chen & Sun, evidence from the internal transcribed spacers (ITS) of nuclear rDNA. Belgian Journal of Botany 136(1): 91-96

Zhou H-F, Xie Z-W, Ge S*. 2003. Microsatellite analysis of genetic diversity and population genetic structure of a wild rice (Oryza rufipogon Griff.) in China. Theoretical and Applied Genetics 107: 332-339 [PDF]

Sun H-Q, Luo Y-B, Ge S*. 2003. A preliminary study on pollination biology of an endangered orchid, Changnienia amoena. Acta Botanica Sinica 45(9): 1019-1023 [PDF]

Bao Y, Ge S*. 2003. Identification of Oryza species with the CD genome based on RFLP analysis of nuclear ribosomal ITS sequences. Acta Botanica Sinica 45(7): 762-765 [PDF]

Funamoto T, Kondo K, Hong D-Y, Ge S, Mao J-F, Ogura H. 2003. A comparative chromosomal study of three Rhodiola species (Crassulaceae) collected in central Tianshan Mountains, Xinjiang, China. Chromosome Science 7; 55-60

熊高明，谢宗强，熊小刚，樊大勇，葛颂. 2003.神农架南坡珍稀植物独花兰的生物学及群落特征。生态学报 23：173-179

张富民，葛颂*，陈文俐. 2003. 横断山区紫乌头复合体nrDNA的ITS序列与系统发育分析。植物分类学报 41: 220-228 [PDF]

包颖，葛颂*. 2003.利用多基因序列探讨稻属药稻复合体二倍体物种的系统发育关系。植物分类学报 41: 497-508 [PDF]

邹喻苹，葛颂. 2003. 新一代分子标记－SNPs及其应用。生物多样性 11: 370-382 [PDF]

2002

Ge S, Li A, Lu B-R, Zhang S-Z, Hong D-Y. 2002. A phylogeny of the rice tribe Oryzaeae based on matK sequence data. American Journal of Botany 89(12): 1967-1972. [PDF]

Gao L, Ge S, Hong D-Y, Lin R-S, Tao G-D, Xu Z-F. 2002. Allozyme variation and conservation genetics of common wild rice (Oryza rufipogon Griff.) in Yunnan, China. Euphytica 124(3): 273-281. [PDF]

Li A, Luo Y-B, Ge S*. 2002. A preliminary study on conservation genetics of an endangered orchid (Paphiopedilum micranthus) from southwestern China. Biochemical Genetics 40(5/6): 195-201. [PDF]

Li A, Luo Y-B, Xiong Z-T, Ge S*. 2002. A preliminary study on conservation genetics of three endangered orchid species. Acta Botanica Sinica 44(2): 250-252. [PDF]

Sun K, Chen X-L, Ma R-J, Li C-B, Wang Q, Ge S*. 2002. Molecular phylogenetics of Hippophae L.(Elaeagnaceae) based on the internal transcribed spacer (ITS) sequences of nrDNA. Plant Systematics and Evolution 235(1-4): 121-134. [PDF]

葛颂，洪德元. 2002. 生物进化研究的现状和展望. 见：《展望21世纪的生命科学》编写组（编著），展望21世纪的生命科学 pp.110-129.

李昂，葛颂*. 2002. 植物保护遗传学研究进展。生物多样性 10(1): 61-71 [PDF]

李昂，罗毅波，葛颂*. 2002. 采用空间自相关分析研究两种兰科植物的群体遗传结构。生物多样性 10(3):249-257 [PDF]

熊治廷，吴剑，李弈，葛颂，赵子恩，桂先群，程增林，黄遵义. 2002. 独花兰野生种群研究--开花与营养体状态的关系。植物学通报 19(1): 87-91 [PDF]

张富民，葛颂*. 2002.群体遗传学研究中的数据处理方法（I）—RAPD数据的AMOVA分析。生物多样性 10(4): 438-444 [PDF]

2001

Ge S, Sang T, Lu B-R, Hong D-Y. 2001. Rapid and reliable identification of rice genomes by RFLP analysis of PCR-amplified Adh genes. Genome 44：1136-1142 [PDF]

Gao L, Ge S, Hong D-Y. 2001. High levels of genetic differentiation of Oryza officinalis Wall. et Watt. From China. The Journal of Heredity 92(6): 511-516. [PDF]

Gao L, Ge S, Hong D-Y, 2001, Intra-population genetic structure and gene flow of Oryza rufipogon Griff. Journal of Plant Research 114: 107-113 [PDF]

Ge S, Sang T, Lu B-R, Hong D-Y. 2001. Phylogeny of the genus Oryza as revealed by molecular approaches. In: Khush G S, Brar D S, Hardy B (eds) Rice Genetics IV. Proceedings of the Fourth International Rice Genetics Symposium. Los Banos (Phillipines): IRRI. pp. 89-105.

He T H, Rao G Y, You R L, Ge S, Zhang D M. 2001. Genetic structure, neterozygosity variation between generations of Ophiopogon xylorrhizus (Liliaceae s.l.), an endemic species in Yunnan, SW China. Biochemical Genetics 39(3/4): 93-98. [PDF]

Li A, Ge S*, 2001. Genetic variation and clonal diversity of Psammochloa villosa detected by ISSR markers. Annals of Botany 87(5): 585-590. [PDF]

Li C B, Zhang D M, Ge S, Lu B R, Hong D Y. 2001. Identification of genome constitution of Oryza malampuzhaensis, O. minuta, and O. punctata by multicolor genomic in situ hybridization. Theoretical and Applied Genetics 103(2/3): 197-203 [PDF]

Li C B, Zhang D M, Ge S, Lu B R, Hong D Y. 2001. Genomic differentiation and inter-genomic relationships among C, E and D genomes in Oryza officinalis complex (Poaceae) as revealed by multicolor genomic in situ hybridization. Theoretical and Applied Genetics 103(2/3): 204-211. [PDF]

Qian W, Ge S*, Hong D-Y. 2001. Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers. Theoretical and Applied Genetics 102：440-449 [PDF]

Xie Z-W, Lu Y-Q, Ge S*, Hong D-Y, Li F-Z. 2001, Clonality in wild rice, Oryza rufipogon (Poaceae) and its implications for conservation managements. American Journal of Botany 88(6): 1058-1064. [PDF]

何田华，葛颂. 2001. 植物种群交配系统、亲本分析以及基因流动研究。植物生态学报 25(2): 144-154. [PDF]

何川生，何兴金，葛颂，李天飞，许凌云，许美玲，许介眉. 2001. 烤烟品种资源的RAPD分析。植物学报 43(6): 610-614. [PDF]

卢宝荣，葛颂，桑涛，陈家宽，洪德元. 2001. 稻属分类的现状及存在问题。植物分类学报 39(4): 373-388. [PDF]

钱韦，,谢中稳，葛颂*，,洪德元. 2001.中国疣粒野生稻的分布、濒危现状和保护前景。植物学报43（12）：1279-1287. [PDF]

钱韦，葛颂。2001. 居群遗传结构研究中显性标记数据分析方法初探。遗传学报 28(3)：244-255. [PDF]

2000

Gao L, Ge S, Hong D-Y. 2000. Allozyme variation and population genetic structure of common wild rice, Oryza rufipogon Griff. in China. Theoretical and Applied Genetics 101(3): 494-502 [PDF].

Gao L, Ge S, Hong D-Y. 2000. Low level of genetic diversity within population and high differentiation among populations of a wild rice, Oryza granulata from China. International Journal of Plant Sciences 161(4): 691-697. [PDF]

Gao L-Z, Chen W, Jiang W, Ge S, Hong D-Y, Wang X. 2000. Genetic erosion in northern marginal population of the common wild rice Oryza granulata Griff. and its conservation, revealed by the change of popualtion genetic structure. Hereditas 133: 47-53.

He T-H, Rao G-Y, You R-L, Ge S, Hong D-Y. 2000. Spatial autocorrelation of genetic variation in three strands of Ophiopogon xylorrhizus (Liliaceae s. l.). Annals of Botany 86:113-121. [PDF]

He T-H, Rao G-Y, You R-L, Ge S, Zhang D-M. 2000. Genetic diversity of widespread Ophiopogon intermedius, a comparison with endangered O. xylorrhizus. Biological Conservation 96:253-257. [PDF]

Li C B, Zhang D M, Ge S, Lu B R, Hong D Y, 2000. Detection of differentiation among BB, CC and EE genomes in the genus Oryza by two-probe genomic in situ hybridzation. Acta Botanica Sinica 42(9): 988-990. [PDF]

Li C-B, Zhang D-M, Ge S, Lu B-R, Hong D-Y. 2000. Relationships among the CC, DD, and EE genomes in Oryza officinalis complex detected by two-probe genomic in situ hybridization. International Rice Research Notes 25(3): 18-20 [PDF]

Li C-B, Zhang D-M, Ge S, Hong D-Y. 2000. Identification of genomic constitution of three tetraploid Oryza species through two-probe genomic in situ hybridization. International Rice Research Notes 25(2): 19-22.

Xie Z-W, Ge S, Wang K-Q, Hong D-Y. 2000. Evaluation of in situ conservation of Oryza rufipogon populations using RAPD markers. International Rice Research Notes 25(2): 17-19.

Yu H, Ge S*, Hong D-Y. 2000. Allozyme diversity and population genetic structure of Pinus densata Master in northwestern Yunnan, China. Biochemical Genetics 38(5/6): 138-146. [PDF]

高立志，葛颂，洪德元. 2000. 普通野生稻Oryza rufipogon生态分化的初探。作物学报 26(2): 210-216.

葛颂. 2000. 植物的物种形成及其研究进展。见: 李承森主编，植物科学进展(第三卷) pp. 3-15, 北京：高等教育出版社。

葛颂，洪德元. 2000. 植物物种生物学。见邹承鲁（主编）当代生物学 中国致公出版社，463-464.

何兴金，葛颂，许介眉，洪德元. 2000. 葱属系统发育的PCR-RFLP分析。中国科学(C辑) 30:183-191.

李昂，王可青，葛颂*. 2000. 不同采样策略对细距堇菜遗传多样性估算的影响。植物学报 42(10):1069-1074. [PDF]

钱韦，葛颂*，洪德元. 2000. 采用RAPD和ISSR标记探讨中国疣粒野生稻的遗传多样性。植物学报 42(7):741-750. [PDF]

吴世安，吕海亮，杨继，饶广远，尤瑞麟，葛颂，钟杨. 2000. 叶绿体DNA片段的RFLP分析在黄精族系统学研究中的应用。植物分类学报 38(2):97-110. [PDF]

虞泓，葛颂*，黄瑞复，姜汉侨. 2000. 云南松及其近缘种的遗传变异与亲缘关系初探。植物学报 42(1):107-110. [PDF]

1999

Ge S, Sang T, Lu B-R, Hong D-Y. 1999. Phylogeny of rice genomes with emphasis on origins of allotetraploid species. Proceedings of National Academy of Sciences USA 96: 14400-14405. [PDF]

Ge S, Wang K Q, Hong D Y, Zhang W H, Zu Y G, 1999, Comparisons of genetic diversity in the endangered Adenophora lobophylla and its widespread congener, A. potaninii. Conservation Biology 13(3): 509-513. [PDF]

Ge S, Oliveira G C X, Schaal B A, Gao L-Z, Hong D-Y. 1999. RAPD variation within and between natural populations of wild rice (Oryza rufipogon) from China and Brazil. Heredity 82(6): 638-644. [PDF]

Ge S, Hong D-Y, 1999, A new species of Chinese Adenophora (Campanulaceae). Novon 9(1): 46.

Ding K-Y, Ge S, Yu Z-H, Hong D-Y. 1999. Allozyme variation in the diploid (A genome) populations of Scilla scilloides (Hyacinthaceae). Plant Systematics and Evolution 218: 23-31. [PDF]

Hizume M, Shibata F, Kondo K, Hoshi Y, Kondo T, Ge S, Yang Q-E, Hong D-Y. 1999. Identification of chromosomes in two Chinese spruce species by multicolor fluorescence in situ hybridization. Chromosome Science 3: 37-41.

Li C-L, Wang Q, Jiang S-Y, Ge S, Wang K-Q. 1999. Genetic diversity of allozymes in populations of Cycas panzhihuaensis. In Chen J-R. (ed.) Biology and Conservation of Cycas – Proceedings of 4th International Conference on Cycas Biology. Pp. 323-327, International Academic Publishers, Beijing.

Xie Z-W, Ge S*, Hong D-Y. 1999. Preparation of DNA from silica gel dried mini-amount of leaves of Oryza rufipogon for RAPD study and total DNA bank construction. Acta Botanica Sinica 41(8): 884-890. [PDF]

高立志，葛颂，洪德元，陶国达，许再富. 1999. 云南疣粒野生稻的群体遗传结构及其原位保护的意义。中国科学(C辑) 29(3): 297-302.

Gao L-Z, Ge S, Hong D-Y, Zhang J-W, Luo Q-Y, Tao G-D, Xu Z-F, 1999, A study on population genetic structure of Oryza meyeriana (Zoll. et Mor. ex Steud. ) Bail. from Yunnan and its in situ conservation significance. Science in China 42(1): 102-108.

葛颂，洪德元. 1999. 濒危植物裂叶沙参及其广布种泡沙参遗传多样性的对比研究。遗传学报 26: 410-417. [PDF]

葛颂，王可青，董鸣. 1999. 毛乌素沙地根茎灌木羊柴的遗传多样性和克隆结构，植物学报 41(3): 301-306 [PDF]

胡小辉，陈家宽，王建波，何国庆，葛颂. 1999. 长喙毛茛泽泻遗传多样性及其与繁育系统的关系。云南植物研究 21(2)：232-238.

葛颂. 1999. 也谈“Biosystematics”的中文译名以及由此引发的思考。植物分类学报 37(6): 621-626. [PDF]

王可青，葛颂，董鸣. 1999. 根茎禾草沙鞭的等位酶变异及克隆多样性。植物学报 41(5): 537-540. [PDF]

1998

Ge S, Hong D-Y, Wang H-Q, Liu Z-Y, Zhang C-M, 1998, Population genetic structure and conservation of an endangered conifer, Cathaya argyrophylla (Pinaceae). International Journal of Plant Sciences 159(2): 351-357. [PDF]

Ding K-Y, Ge S, Yu Z-H, Hong D-Y, 1998, Cytotype variation and cytogeography of Scilla sinensis (Louriro) Merrill (Hyacinthaceae) in China. Hereditas 129(2): 151-160.

He T-H, Rao G-Y, You R-L, Ge S, 1998, Mating system of Ophiopogon xylorrhizus (Liliaceae), an endangered species in SW China. International Journal of Plant Sciences 159(3): 440-445. [PDF]

Kondo K, Tanaka R, Hizume M, Kokubugata G, Hong D-Y, Ge S, Yang Q-E, 1998, Cytogenetic studies on wild Chrysanthemum sensu lato in China VI. Karyomorphological characters of five species of Ajania and each one species of Brachanthemum, Dendranthema, Elachanthemum, Phaeostigma and Tanacetum in highlands of Gansu, Qinghai and Sichuan Provinces. Journal of Japanese Botany 73: 128-136.

葛颂. 1998. 植物群体遗传结构研究的回顾和展望。见: 李承森主编，植物科学进展(第一卷)。pp. 1-15, 北京：高等教育出版社。

葛颂，洪德元. 1998. 泡沙参复合体(桔梗科)的物种生物学研究, IV.等位酶水平的变异和分化。植物分类学报 36(6): 581-589. [PDF]

何兴金，葛颂，许介眉，洪德元. 1998. 葱属系统发育的PCR-RFLP分析初报。植物学报 40(11): 1083-1086 [PDF]

王可青，葛颂. 1998. 国产沙参属五个种的核型研究。云南植物研究 20(1): 58-62.

周其兴，葛颂，顾志建，岳中枢. 1998. 中国红豆杉属及其近缘植物的遗传变异和亲缘关系研究。植物分类学报 36(5): 323-332. [PDF]

1997

Ge S, Zhang D-M, Wang H-Q, Rao G-Y, 1997, Allozyme variation in Ophiopogon xylorrhizus, an extreme endemic species of Yunnan, China. Conservation Biology 11(2): 562-565. [PDF]

葛颂，王海群，张灿明，洪德元. 1997. 八面山银杉林的遗传多样性和群体分化。植物学报 39(3): 266-271 [PDF]

郭延平，潘开玉，葛颂. 1997. 濒危植物裂叶沙参的大小孢子发生及雌雄配子体发育。植物分类学报 35(4): 293-296. [PDF]

葛颂，Schaal B A，洪德元. 1997. 用核糖体DNA的ITS序列探讨裂叶沙参的系统位置---兼论ITS片断在沙参属系统学研究中的价值。植物分类学报 35(5): 385-395. [PDF]

葛颂. 1997. 遗传多样性。见：蒋志刚、马克平、韩兴国（主编）保护生物学。pp. 11-19，杭州：浙江科学技术出版社 [PDF]

高立志，周毅，葛颂，洪德元，梁耀懋，林登豪，陈成斌，吴妙鑫，黄德爱. 1998. 广西普通野生稻(Oryza rufipogon Griff.)的遗传资源现状及其保护对策。中国农业科学 31(1): 32-39.

1996

Funamoto T, Kondo K, Hong D-Y, Yang Q-E, Ge S, Hizume M, Shimada T,1996, Karyomorphological studies in Chinese Parnassia (Ⅱ). Three species in Qinghai Province. La KromosomoⅡ-82: 2845-2854.

高立志，张寿洲，周毅，葛颂，洪德元. 1996. 中国野生属的现状调查。生物多样性 4(3): 160-166 [PDF]

葛颂，洪德元. 1996. 泡沙参同工酶基因位点的遗传分析。植物学报 38(6): 431-438 [PDF]

裴颜龙，王岚，葛颂，王连铮. 1996. 野生大豆遗传多样性. I. 四个天然居群等位酶分析。大豆科学 15(4): 303-310.

1995

Funamoto T, Kondo K, Hong D-Y, Ge S and Hizume M, 1995, Karyomorphology of Sedum aizoon var. aizoon and Viola biflora in Qinghai Province, China. La KromosomoⅡ-79-80: 2760-2766.

Hizume M, Kondo K, Ge S, Hong D-Y, 1995, A new locus of 18S rRNA gene in chromosomes of a cultivated clone of Allium sativum in China. Chromosome Information Service No. 59: 26-28.

葛颂，洪德元. 1995. 泡沙参复合体（桔梗科）的物种生物学研究 Ⅲ. 性状的遗传变异及其分类价值。植物分类学报 33(5): 433-443.

洪德元，葛颂，张大明，汪小全，程树志. 1995. 植物濒危机制研究的原理和方法。钱迎倩，甄仁德（主编）生物多样性研究进展 pp125-133，北京：中国科学技术出版社 [PDF]

朱相云，葛颂，洪德元. 1995. 五加属学名考证及其一些新组合。植物研究 15(4): 441-443.

1994

Ge S, Hong D-Y, 1994, Biosystematic studies on Adenophora potaninii complex.Ⅱ. crossing experiment. Cathaya 6: 15-26.

葛颂. 1994. 同工酶和植物进化生物学研究。见：陈家宽，杨继（主编），植进化生物学。pp.153-208，武汉: 武汉大学出版社。

葛颂. 1994. 酶电泳资料和系统与进化植物学研究综述。武汉植物学研究 12(1): 71-84.

葛颂，洪德元. 1994. 泡沙参复合体的物种生物学研究Ⅰ.表型的可塑性。植物分类学报 32(6): 489-503. [PDF]

葛颂，洪德元. 1994. 遗传多样性及其检测方法。见: 钱迎倩, 马克平(主编)生物多样性研究的原理与方法。pp.123-140, 北京：中国科学技术出版社 [PDF]

Before 1993

Kondo K, Tanaka R, Ge S, Hong D-Y and Nakata M, 1992, Cytogenetic studies on wild Chrysanthemum sensu lato in China. Journal of Japanese Botany 67: 324-329.

葛颂. 1989. 用同工酶定量分析林木群体变异和分化的方法。西南林学院学报 9(1): 84-90.

葛颂. 1989. 遗传的多态现象。生物学通报 (6): 7-9.

葛颂. 1988. 同工酶与林木群体遗传变异研究。南京林业大学学报 10(1): 68-77. [PDF]

葛颂，王明庥，陈岳武. 1988. 用同工酶研究马尾松群体的遗传结构。林业科学 24(4): 399-409.

余丽云，葛颂，李桐森. 1988. 华山松的核型研究。西南林学院学报 9(1): 15-18.

葛颂，黄敏仁，许农. 1987. 马尾松GOT、LDH和MDH同工酶的遗传方式和连锁关系。遗传学报 14(6): 428-435.

陈天华，叶志宏，葛颂. 1985. 马尾松不同海拔群体的核型分析。南京林学院学报 8(3): 132-138.

Books:

Futuyma D. J. [美]著 (葛颂、顾红雅、饶广远、张德兴、杨继、孔宏智、王宇飞主译), 2016。生物进化。北京：高等教育出版社。Pp. 651

国家林业局野生动植物保护与自然保护区管理司、中国科学院植物研究所编著（主编：印红；副主编：张希武、葛颂、刘亚文），2013，中国珍稀濒危植物图鉴。中国林业出版社，北京。

Hong D Y, Ge S, Lammers TG, Klein LL. 2011, Campanulaceae. In Wu, Raven & Hong (eds.): Flora of China 19: 505-563. Science Press & Missouri Botanical Garden

张志勇，葛颂. 2005. 第四章：物种濒危的遗传学原理。李典谟、徐汝梅主编：物种濒危机制和保育原理。北京：科学出版社。P.42-59

孙海芹，李昂，熊高明，谢宗强，葛颂. 2005. 第九章：独花兰濒危机制和保护对策的研究。李典谟、徐汝梅主编：物种濒危机制和保育原理。北京：科学出版社。P.150-177

邹喻苹，葛颂，王晓东. 2001. 系统与进化植物学中的分子标记。科学出版社。

祖元刚，张文辉，阎秀峰，葛颂等. 1999. 濒危植物裂叶沙参保护生物学研究。科学出版社。

葛颂. 1997. 第二章：遗传多样性。见：蒋志刚、马克平、韩兴国（主编）保护生物学。pp. 11-19，杭州：浙江科学技术出版社。